PUBLICATIONS
Fengyan Shi
Center for Applied Coastal Research, University of Delaware
Papers submitted or in revision:

Zhou, Z., Yu, X., Hsu, T.J., Shi, F., Geyer, W. R. and Kirby, J. T., 2016, "Large eddy simulation of idealized river plumes at high Reynolds number", Journal of Geophysical Research: Oceans , in review.

Jenkins, R. L., Kukulka, T., Kirby, J. T., Shi, F. and Scarborough, R. W., 2016, "Surface wave dynamics in Delaware Bay and its adjacent coastal shelf", submitted to Journal of Geophysical Research: Oceans, in revision.

Lu, Y., Shi, F., Kirby, J. T., and Feng, W., 2016, ``A twolayer model for oblique internal hydraulic jumps generated by a sharp lateral consriction", Submitted to Journal of Fluid Mechanics, Sept, 2016.

Chakrabarti, A., Brandt, S. R., Chen, Q., and Shi, F., 2016, ``Boussinesq modeling of wave induced hydrodynamics in coastal wetlands during Hurricane Isaac", Journal of Geophysical Research: Oceans, in revision.

Lynett P., et al., 2016, ``InterModel Analysis of TsunamiInduced Coastal Currents", submitted to Ocean Modelling , Sep. 2016
Papers in Journals:

Schnyder, J. S. D., Eberli, G. P., Kirby, J. T., Shi, F., Tehranirad, B., Mulder, T., Ducassou, E., H ebbeln, D. and Wintersteller, P., 2016, "Tsunamis caused by submarine slope failures along western Gr eat Bahama Bank", Nature, Scientific Reports, in press.

Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, "NHWAVE: Consistent boundary conditions and turbulence modeling",
Ocean Modelling, doi: 10.1016/j.ocemod.2016.09.002

Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, "Wave breaking in the surf zone and deep water in a nonhydrostatic RANS model, Part 1: Organized wave motions",
Ocean Modeling, doi: 10.1016/j.ocemod.2016.09.001

Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, "Wave breaking in the surf zone and deep water in a nonhydrostatic RANS model, Part 2: Turbulence and mean circulation",
Ocean Modeling, doi: 10.1016/j.ocemod.2016.09.011

Ma, G., Farahani, A. A., Kirby, J. T., Shi, F., 2016, Modeling wavestructure interactions by an immersed boundary method in a sigmacoordinate model, Ocean Engineering, 125, 238247.

Shi, F., Chickadel, C., Hsu, T.J., Kirby, J. T., Farquharson, G. and Ma, G., 2016, ``Frontal features of the Columbia River mouth seen from a highresolution nonhydrostatic model", Estuarines and Coasts, DOI 10.1007/s122370160132y

Son, S. Jung, T.H., and Shi, F., 2016, ``Vertical structure of ripcurrents in the nearshore Circulation", Journal of Coastal Research , Special issue, 72, 14021406.

Orzech, M., Shi, F., Veeramony, J., Bateman, S., Calantoni, J. and Kirby, J. T., 2016, ``Incorporating floating surface objects into a fully dispersive surface wave model", Ocean Modelling, in press.
 Kirby, J. T., Shi, F., Nicolsky, D. and Misra, S., 2016, "The 27 April 1975 Kitimat, British Columbia submarine landslide tsunami: A comparison of modeling approaches", Landslides, doi:10.1007/s103460160682x.

Wu, G., Shi, F., Kirby, J. T., Mieras, R., Liang, B., Li, H. and Shi, J., 2016, "A prestorage, subgrid model for simulating flooding and draining processes in salt marshes",
49 Coastal Engineering, 108, 6578.

Shi, J., Shi, F., Kirby, J. T. Gu, G. and Ma, G., 2015, ``Pressure decimation and interpolation (PDI) method for a baroclinic nonhydrostatic model", Ocean Modelling, 96, 265279.

Ma, G., Kirby, J. T., Hsu, T.J. and Shi, F., 2015, "A twolayer granular landslide model for tsunami wave generation: Theory and computation", Ocean Modelling, 93. 4055.

Tehranirad, B., Harris, J. C., Grilli, A. R., Grilli, S. T., Abadie, S., Kirby, J. T. and Shi, F., 2015,
"Farfield tsunami hazard on the western European and US east coast from a large scale flank collapse of the Cumbre Vieja volcano, La Palma",
Pure and Applied Geophysics, DOI 10.1007/s0002401511355

Chen, J., Hsu, T., Shi, F., Raubenbeimer, B., and Elgar, S., 2015, ``Hydrodynamic and sediment transport modeling of New River Inlet (NC) under the interaction of tides and waves",
J. Geophy. Res. , DOI: 10.1002/2014JC010425

Goncharenko, Y.V., Farquharson, G., Shi, F., Raubenheimer, B., Elgar, S.,2015,``Estimation of Shallowwater Breaking Wave Height from Synthetic Aperture Radar",Geosicence and Remote Sensing Letters , DOI:
10.1109/LGRS.2015.2445492

Shi, F., Vittori, G. and Kirby, J. T., 2015, ``Concurrent correction method for modeling morphological response to dredging an offshore sandpit", Coastal Engineering , 97,110.
 Keshtpoor, M., Puleo, J. A., Shi, F. and Ma, G., 2015,``3D Numerical Simula tion of Turbulence and Sediment Transport within a Tidal Inlet", Coastal Engineering, 96,1326.
 Grilli, S. T., O'Reilly, C., Harris, J. C., Tajalli Bakhsh, T., Tehra nirad, B., Banihashemi, S., Kirby, J. T., Baxter, C. D. P., Eggeling, T., Ma , G. and Shi, F., 2015 "Modeling of SMF
tsunami hazard along the upper U. S. East Coast: Detailed impact around Oc ean City, MD", Nat. Hazards, DOI 10.1007/s1106901415228.
 Tappin, D. R., Grilli, S. T., Harris, J. C., Geller, R. J., Masterlark, T., Kirby, J. T., Shi, F., Ma, G., Thingbaijam, K. K. S. and Mai, P. M., 2014, ``Did a submarine landslide contribute to the 2011 Tohoku tsunami?", Marine Geology, DOI: 10.1016/j.margeo.2014.09.043. See news report about the paper in Science.
 Chen, J., Shi, F., Hsu, T.J., and Kirby, J. T., 2014,``NearCoMTVD  a quasi3D nearshore circulation and sediment transport model", Coastal Engineering, 91, 200212.
 Keshtpoor, M., Puleo, J. A., Shi, F. and DiCosmo, N., 2014, ``Numerical simulation of nearshore hydrodynamics and sediment transport downdrift of a tidal inlet", Journal of
Waterway, Port, Coastal and Ocean Engineering, 10.1061WW.19435460.0000273.
 Ma, G., Shi, F., Hsiao, S.C., and Wu Y.T.,2014, ``Nondydrostatic modeling of wave interaction with porous structures", Coastal Engineering, 91, 8498

Hansen, J. E., Janssen, T. T., Raubenheimer, B., Shi, F., Barnard, P., and Jones, I. S., 2014, ``Observations of surfzone alongshore pressure gradients at an energetic ocean beach", Coastal Engineering, 91, pp. 251260.
 Ma, G., Chou, Y.J. and Shi, F., 2014, ``A waveresolving model for nearshore suspended sediment transport", Ocean Modelling, 77, 2014, 3349.
 Keshtpoor, M., Puleo, J. A., Shi, F., 2014, ``Downdrift beach erosion adjacent to the Indian River Inlet, Delaware, USA", Shore & Beach, Vol. 82, No. 111.
 Ma, G., Shi, F., Liu, S. and Qi, D., 2013,``Migration of sediment deposition due to the construction of largescale structures in Changjiang Estuary", Applied Ocean Research, 43, 148156.
 Ma, G., Kirby, J. T. and Shi, F., 2013, ``Numerical simulation of tsunami waves generated by deformable submarine landslides", Ocean Modelling, 69, 146165.
 Ma, G., Kirby, J T., Su, S. F., Figlus, J. and Shi, F., 2013, "Numerical study of turbulence and wave damping induced by vegetation canopies", Coastal Engineering, 80, 6878.
 Shi, F., Cai, F., Kirby, J. T. and Zheng, J., 2013, ``Morphological modeling of a nourished bayside beach with a low tide terrace", Coastal Engineering, 78, 2334.
 Sawyer, A. H., Shi, F., Kirby, J. T. and Michael, H. A., 2013, ``Dynamic response of surface watergroundwater exchange to currents, tides and waves in a shallow estuary'', J. Geophys. Res.,
118, doi:10.1002/jgrc.20154.

Kirby, J. T., Shi, F. Harris, J. C., and Grilli, S. T., 2013, "Sensitivity analysis of transoceanic tsunami propagation to dispersive and Coriolis effects", Ocean Modeling , 62, 3955.
 Grilli, S. T., Harris, J. C., Tajalibakhsh, T., Masterlark, T. L., Kyriakopoulus, C., Kirby, J. T. and Shi, F., 2012, ``Numerical simulation of the 2011 Tohoku tsunami based on a new transient
FEM coseismic source", Pure and Applied Geophysics, doi:10.1007/s000240120528y

Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D. and Grilli, S. T., 2012, "A highorder adaptive timestepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation", Ocean Modelling, 4344, 3651.

Ma, G., Shi, F. and Kirby, J. T., 2012, "Shockcapturing nonhydrostatic model for fully dispersive surface wave processes", Ocean Modelling, 4344, 2235.

Shi., F., Hanes, D. M., Kirby, J. T., and Erikson, L., Barnard, P., and Eshleman, J., 2011, Pressure gradientdriven nearshore circulation on a beach influenced by an adjacent large inlet , J. Geophys. Res., doi:10.1029/2010JC006788.

Ma, G., Shi, F., and Kirby, J. T., 2011, A polydisperse twofluid model for surfzone bubble simulation, J. Geophys. Res. , doi:10.1029/2010JC006667.

Ma, G., Shi, F., Qi, D., and Liu, S., 2011, Hydrodynamic modeling of Changjiang Estuary: model skill assessment and largescale structure impacts, Applied Ocean Research , 33, 6978.

Shi, F., Kirby, J. T., and Ma, G., 2010, Modeling quisecent phase transport of air bubbles induced by breaking waves, Ocean Modelling , 35, 105117.

Grilli,S.T., Dubosq, S., Pophet,N. Perignon, Y. Kirby, J. T., and Shi, F., 2010, Numerical simulation of coseismic tsunami impact on the
North shore of Puerto Rico and farfield impact on the US
east coast: a firstorder hazard analysis, Natural Hazards and Earth System Sciences, 10, 21092125.

Qi, H., Cai, F., Lei, G., Cao, H., and Shi, F., 2010, The response of three main beach types to tropical storms in South China, Marine Geology, 275, 244  254.

Zhang, W., Shi, F., Hong, H., Shang, S. and Kirby, J. T., 2010, Tidesurge interaction intensified by the Taiwan Strait, J. Geophys. Res., 115, C06012, doi:10.1029/2009JC005762.

Waythomas C.F., Watts P., Shi F., and Kirby J. T., 2009, Pacific basin tsunami hazards associated with
mass flows in the Aleutian Arc of Alaska, Quaternary Science Review, 28, 1112, 1006  1019, doi:10.1016/j.quascirev.2009.02.019

Smith K. A., North E. W., Shi F. Chen SN, Sanford L., Hood R. R., Koch E. W. and Newell R. I. E., 2008,
Modeling the effects of oyster reefs and breakwaters on seagrass beds, Estuaries and Caosts, 32 (4), 748757.
 Shi, F. and Kirby, J. T., 2008,
Discussion of 'Wave setup and setdown generated by obliquely incident waves' by T.W. Hsu et al, Coastal Engrng, 53, 865877, 2006', Coastal Engrng., 55, 12471249.
 Shi, F., Kirby, J. T., Hanes, D., 2007, An efficient modesplitting method for a curvilinear nearshore circulation model,
Coastal Engineering, , 54, 811824.
 Chen SN, Sanford, L. P., Koch, E. W., Shi, F., North, E. W., 2007, A nearshore model to investigate the effects of seagrass bed geometry on wave attenuation and suspended sediment transport,
Estuaries and Coasts,
Vol. 30, No.2, 296310.
 Grilli, S. T., Ioualalen, M., Asavanant, J., Shi, F., Kirby, J. T., Watts,
P., 2007, Source constraints and model simulation of the December 26, 2004,
Indian Ocean Tsunami,
Journal of Waterway, Port, Coastal and Ocean Engineering, Special Issue on Tsunami Engineering,
Vol. 133, No.6, 414428.

Shi, F. and Kirby, J. T.,2005,
Curvilinear parabolic approximation for surface
wave transformation with wavecurrent interaction
Journal of Computational Physics , 204, 562586

Zheng, Q, Yuan, Y., Shen, S.S., Huang, N. E., Klemas, V., Yan, X.,
Shi, F., Zhang, X., Zhao, Z., Li, X., and
ClementeColon, P., 2004,
Evidence of upstream solitons
and downstream wavetrain in a near resonant air flow over
an island topography
, International Journal of Remote Sensing
, 25 (21), 4433 4440, DOI: 10.1080/01431160310001609716

Kong, Y., Shi, F., and Ding P., 2004, A statistical model for predicting storminduced sediment deposition in NorthChannel at Yangtze River Mouth, Journal of ECNU (Nature Science, in Chinese), 2004 (1), 2534.

Chen, Q., Kirby, J. T., Dalrymple, R. A., Shi, F. and Thornton, E. B., 2003,
Boussinesq modeling of longshore currents,
J. Geophys.
Res., Vol. 108, No. C11, 3362

Shi,F.,Svendsen,I.A., Kirby, J.T., and Smith, J. M., 2003,
A curvilinear version of
a Quasi3D nearshore circulation model, Coastal Engineering, 49
(12), 99124

Shi, F., Kirby, J. T., Dalrymple, R. A., and Chen Q., 2003, Wave simulations in
Ponce De Leon Inlet using Boussinesq model, Journal of
Waterway, Port, Coastal and Ocean Engineering, 129(3), 124135.

Shi, F., Dalrymple R. A., Kirby, J. T., Chen, Q. and
Kennedy, A., 2001,
A fully nonlinear Boussinesq Model in generalized
curvilinear coordinates, Coastal Engineering , 42(4), 237258.

Shi, F., Zhu, S., Zhu, J. and Ding, P., 2000,
Numerical study on residual current and its effect on mass transport in the
Hangzhou Bay and the Yangtze Estuary, I. A 3D joint model of the Hangzhou Bay
and the Yangtze Estuary, ACTA Oceanologica Sinica, 22(5): 112.

Zhu S., Ding, P., Shi, F. and Zhu, J., 2000,
Numerical study on residual current and its effect on mass transport in the
Hangzhou Bay and the Yangtze Estuary, II. Residual current and mass transport
in winter, ACTA Oceanologica Sinica, 22(6): 111.

Shi, F., Ding, P. and Kong, Y., 1999, A numerical
fluid dynamic model using fine boundaryfitted grids in estuarine and tidal
flats, China Ocean Engineering 13(2), 115124.

Bao X., Sun, W. and Shi, F., 1999, A threedimensional
coastal barotropic model in generalized curvilinear grid, Chinese Journal
of Oceanology and Limnology 17, 289299.

Ding, P., Shi, F. and Kong, Y., 1999, A
threedimensional diffusion equation of suspended sediment with waves and
currents, Chinese Science Bulletin, 44(19), 18141817.

Yu, Z., Zhang, J., Shi, F., and Wu, C., 1999, New method for evaluating toxicity of heavy metals on marine macroalgae, Oceanol. Limnol. Sin. , 30 (2), 199205.

Shi, F., Sun, W. and Wei, G., 1998,
A WDM method on
generalized curvilinear grid for calculation of storm surge flooding,
Applied Ocean Research, 19(4), 275282.

Shi, F., Ding, P. and Kong, Y., 1998, An implicit
numerical model using contravariant velocity components and calculations in a
harbourchannel area, ACTA Oceanologica Sinica, 17(4), 423432.

Ding, P., Kong, Y. and Shi, F., 1998, Radiation stress
of water waves and its calculation,
Journal of ECNU (Natural Science), 1998(1), 8287.

Ding, P., Shi, F. and Kong, Y., 1998, Numerical
calculation of Combined refractiondiffraction of random waves in nonuniform
currents, Journal of ECNU (Natural
Science), 1998(2), 6976.

Shi, F., Sun, W. and Wei, G., 1997, A selfadaptive
grid model for the simulation of moving lateral boundaries in problems
involving the shallow water equations, ACTA Oceanologica
Sinica, 19 (2), 19.

Shi, F. and Sun, W., 1997, Hopscotch method in the numerical
forecasting of storm surges, Journal
of Ocean University of Qingdao, 27(3), 271276.

Xu, Z., Shi, F., Lou, S. and Shen, S.S., 1997,
Velocities of precursor soliton generation of singlelayer flow, Chin. J.
Oceanol. Linmol, 15(2), 129136

Xu, Z., Shi, F. and Shen, S.S., 1997, On period
and amplitude of the locally forced soliton generation of singlelayer flow,
Progress in Nature Science, 7 (5), 574582.

Shi, F. and Zheng, L., 1996, A BFG model for calculation
of tidal current and diffusion of pollutants in nearshore areas, ACTA
Oceanologica Sinica, 15 (2), 283296.

Xu, Z., Shi, F., Lou S. and Shen S.S., 1996,
Theoretical mean wave resistance of precursor soliton generation of
singlelayer flow, Chin. J. Oceanol. Linmol, 14(4), 330336.

Xu, Z., Xu Y. and Tian J., Shi, F., 1996, On the
theoretical mean wave resistance of precursor soliton generation II. Numerical
calculation, Journal of Ocean
University of Qingdao, 26 (2), 139146.

Shi, F. and Sun, W., 1995, Development and application
of a moving boundary model in a polar coordinate transformation,
Oceanol. Limnol. Sinica, 26 (4), 369376.

Shi, F. and Sun, W., 1995,
A variable boundary model of
storm surge flooding in generalized curvilinear grids, International
Journal for Numerical Methods in Fluids, 21 (8), 642651.

Sun, W., Yang, Z. and Shi, F., 1994, On the numerical
prediction models of storm surge inundation,
Journal of Ocean University of Qingdao, 24 (3), 293300.

Xu, Z., Shi, F. and Shen, S.S., 1994, A numerical
calculation of forced supercritical soliton in a singlelayer flow,
Journal of Ocean University of Qingdao, 24 (3), 309319.

Shi, F. and Sun, W., 1993, Numerical simulations of storm
surge inundations in partial areas of the Bohai Sea,
Oceanol. Limnol. Sinica, 24 (1), 1623.
Conference Publications

Chen, J.L., Hsu, T.J., Shi, F. Raubenheimer, B., and Elgar, S., 2014, "Hydrodynamic modeling of New River Inlet, North Carolina, using NearCoMTVD", Proc. 34nd Int. Conf. Coastal Engineering, Seoul, July.

Keshtpoor M., Puleo J.A., Shi F., 2013, Downdrift Beach Erosion Adjacent to the Indian River Inlet, Delaware, USA., NSBPA Conference,
The Richard Stockton College of New Jersey, Galloway, New Jersey.

Grilli, S., Harris, J. C., Kirby, J. T., Shi, F., Ma, G., Masterlark, T., Tappin, D. and Tajalli Bakhsh, T. S., 2013, "Modeling of the TohokuOki 2011 tsunami generation, farfield and coastal impact:
A mixed coseismic and SMF source", Proc. Coastal Dynamics 2013, Arcachon, June.

Grilli, S.T., J.C. Harris, J.T. Kirby, F. Shi, and G. Ma, T. Masterlark, D.R. Tappin and T.S. TajaliBakhsh 2013. On the dispersive modeling of the 2011 Tohoku tsunami generation by coseismic/SMF processes, and near and farfield impact. In Proc. 28th Intl. Workshop on Water Waves and Floating Bodies
(L'isle sur la Sorgue, France, April 2013) (ed. B. Molin, O. Kimmoun, F. Remy), pp. 7780, Ecole Centrale de Marseilles.

Grilli, S. T., Harris, J. C., TajaliBaksh, T. S., Tappin, D. R., Masterlark, T., Kirby, J. T., Shi, F. and Ma, G., 2013,"Recent progress in the nonlinear and dispersive modeling of tsunami generation and coastal
impact: Application to Tohoku 2011", Proc. 13 Journees de l'Hydrodynamique, Chatou, Nov. 2123.

Grilli, S. T., Harris, J. C., Tajalibakhsh, T., Kirby, J. T., Shi, F., Masterlark, T. L. and Kyriakopoulos, C., 2012,
"Numerical simulation of the 2011 Tohoku tsunami: Comparison with field observations and sensitivity to model parameters", Proc. ISOPE, Rhodes, June.

Shi,F., Ma, G., and Kirby, J. T., 2012, ``Application of a TVD solver in a suite of coastal engineering models", 33d Int. Conf. Coastal Engrng., Santander.
 Grilli, S. T., Harris, J. T., Shi, F., Kirby, J. T., Tajalibakhsh, T. and Tehranirad, B., 2012, "Numerical modeling of tsunami coastal impact:
assessment and parameterization of nonlinear, dispersive, and breaking dissipation effects", 33d Int. Conf. Coastal Engrng., Santander.

Kirby, J. T., Ma, G., and Shi, F, 2012, ``Numerical investigation of turbulent bubbly flow under breaking waves", 33d Int. Conf. Coastal Engrng., Santander

Grilli, S. T., Harris, J. T., Shi, F., Kirby, J. T., Tajalibakhsh, T. and Tehranirad, B., 2012, "Numerical modeling of tsunami coastal impact:
assessment and parameterization of nonlinear, dispersive, and breaking dissipation effects", 33d Int. Conf. Coastal Engrng., Santander

Chen, J., Shi, F., and Hsu, T.J., 2011, A numerical investigation on hyperpycnal flow, Proc. Coastal Sediments' 11, Miami, May, 2011.

Shi, F., Ma, G., and Kirby, J. T., 2010, ``Numerical modeling of optical properties inside the surfzone", Proc. 32nd Int. Conf. Coastal Engineering, Shanghai, July.

Misra, S., Narayanaswamy, M. S., Shi, F., and Schulte, R., 2010, ``Design optimization of caisson breakwater superstructures using a 2DV RANSVOF numerical model", Proc. 32nd Int. Conf. Coastal Engineering, Shanghai, July.

Ma, G., Shi, F. and Kirby, J. T., 2010, "A polydisperse twofluid model for bubble plumes under breaking waves", Proc. 7th Int. Conf. Multiphase Flow, ICMF 2010, Tampa, FL, May30June 4.

Kirby, J. T., Pophet, N., Shi, F. and Grilli, S. T., 2009, ``Basin scale tsunami propagation modeling using Boussinesq models: Parallel implementation in spherical coordinates'', Proc. WCCEECCETCCE Joint conference on Earthquake and Tsunami, Istanbul, June 2224, paper 100 (published on CD).

Shi, F., Kirby, J. T., Haller, M. C. and Catalan, P., 2008, "Modeling of surfzone bubbles using a multiphase VOF model", Proc. 31st Int. Conf. Coastal Engineering, Hamburg, September..

Asavanant, J., Ioualalen, M., Kaewbanjak, N., Grilli, S., Watts, P., Kirby, J. and Shi, F., 2008, "Numerical simulation of the December 26, 2004 Indian Ocean tsunami'', in Modeling, simulation and optimization of complex processes, Bock, H. G., Kostina, E., Phu, H. X. and Rannacher, R. (eds), Proc. 3d Int. Conf. on High Performance Scientific Computing, Hanoi, March 610, 2006, 5968.

Chen Y., Shi F., and Kirby J. T., 2007, "Coupling of meteorology, ocean and nearshore models for predicting coastal inundation along Delaware's coast", Proc. Estuarine and Coastal Modeling, Kingston, 150162.

Briganti, R., Kirby, J. T., Shi, F., Brocchini, M., Chen, Q. and Lipphardt, B. L., 2006, "Waveaveraged and waveresolving numerical modeling of vorticity transport in the nearshore region: the SANDYDUCK case study", Proc. 30th Int. Conf. Coastal Engrng., San Diego, September, 10661078.

Shi, F, Kirby, J. T., and Haas K., 2006, Quasi3D Nearshore Circulation Equations: a CLVortex Force Formulation, presented at ICCE 2006, Los Angeles, Proceedings of 30th Intl. Conf. Coastal Engineering.

Watts, P., Ioualalen, M., Grilli, S. T., Kirby, J. T. and Shi, F. ``Numerical simulations of the December 26, 2004 Indian Ocean tsunami using a higherorder Boussinesq model'', Proc. Waves'05, Madrid, July 37 2005, Paper 221.

Zou, Z., Kirby, J. T. and Shi, F., 2004, ``2D Higher order Boussinesq equations for waves in flows with vorticity'', Proc. 29th Int. Conf. Coastal Engrng., Lisbon, September, 106118.

Shi, F., Zhao, Q., and Kirby, J. T., 2004, ``Modeling wave interaction with complex coastal structures using an enhanced VOF model",
29th Intl. Conf. Coastal Engrng., Lisbon, September.

Kirby, J. T., Kennedy, A. B. and Shi, F., ``Irregular forcing and/or irregular response in coupled wavecurrent systems in the nearshore ocean'', SIAM Conference
on Mathematical and Computational Issues in
the Geosciences, Austin, March 1720, 2003.

Kennedy, A. B., Shi, F. and Kirby, J. T., ``Timedependent wave forcing in computational nearshore hydrodynamics'', Proc. Second M.I.T. Conference on Computational Fluid
and Solid Mechanics, Cambridge, June 17  20, 2003.

Kennedy, A. B., Kirby, J. T. and Shi, F., ``Computing unsteady wave
refraction and diffraction in the nearshore'', Proceedings of 28th Intl.
Conf. Coastal Engrng., Cardiff, July, 2002, 426438

Shi, F., Svendsen, I.A. and Kirby, J.T., Cuvilinear modeling of nearshore
circulation in Grays Habour, Washington, Proceedings of 28th Intl.
Conf. Coastal Engrng., Cardiff, July 2002, 810822

Kaihatu, J. M., Shi, F., Kirby, J. T. and Svendsen, I. A., ``Incorporation of
random wave effects into a quasi3D nearshore circulation model'', Proceedings of the 28th International
Conference on Coastal Engineering, Cardiff, July 712, 2002, 747759.

Shi, F., Kirby, J. T., Dalrymple, R. A. and Chen, Q., 2001, A curvilinear
Boussinesq model and its application, presented at Waves'01, San
Francisco, September 2001, published in Ocean Wave Measurement and Analysis, 844853

Hommel, D., Shi, F., Dalrymple, R.A., Kirby, J.T., Chen, Q., 2000, Modeling
of waveinduced vortex near a breakwater,
Proc. 27th Intl. Conf. Coastal Engrng.,
Sydney, 23182330, July 2000.

Chen, Q., Kirby, J. T., Dalrymple, R. A., Kennedy, A. B., Thornton, E. B.,
and Shi, F., 2000, Boussinesq modeling of waves and longshore currents under
field conditions, Proc. 27th Intl. Conf. Coastal Engrng., Sydney, 651663,
July 2000.

Shi, F. and Ding, P., 1998, Moving boundary models of
storm surge flooding, HYDRODYNAMICS, ICHD98, H.Kim, S.H.Lee and S.J.Lee
(eds),
273278.

Shi, F. and Ding, P., 1997, Numerical
simulation of nearshore waveinduced currents, PROCEEDINGS 8TH
NATIONAL CONF. ON ESTUARINE AND COASTAL ENGINEERING, Ocean Press, Beijing,
108114.

Shi, F. and Chen, J., 1997, On moving boundary models used in
wide tidal flats, PROCEEDINGS 8TH NATIONAL CONF. ON ESTUARINE AND
COASTAL ENGINEERING, Ocean Press, Beijing, 507511.

Kong, Y., Shi, F. and Ding, P.,1997, The numerical
calculation of the radiation stress field of random waves,
PROCEEDINGS 8TH NATIONAL CONF. ON ESTUARINE AND COASTAL ENGINEERING, Ocean
Press, Beijing, 747753.

Shi, F. and Sun, W., 1995, A moving boundary model in
a boundaryfitted grid and a simulation of storm surge flooding,
NUMERICAL COMPUTATIONS IN ADVANCED SCIENCE AND TECHNOLOG, NDSTU Press,
Changsha, 134141.
Published Conference Abstracts and other Conference Presentations
 Yu, X., Hsu, T.J., Shi, F. and Kirby, J. T., 2014, ``Highresolution largeeddy simulation of turbulent mixing of a river plume", AGU Fall Meeting, Abstract OS13B07, San Francisco, Dec. 1519.
 Shi, F., Hsu, T.J., Kirby, J. T., Chickadel, C. C., Farquharson, G. and McNeil, C. L., 2014, ``Frontal features of the Columbia River plume seen from a highresolution nonhydrostatic model", AGU Fall Meeting, Abstract OS21E03, San Francisco, Dec. 1519.
 Kirby, J. T., Nicolsky, D., Ma, G., Shi, F., Hsu, T.J. and Schnyder, J. S. D., ``Twolayer models for landslidegenerated tsunamis", AGU Fall Meeting, Abstract OS31E04, San Francisco, December 1519.
 Tehranirad, B., Kirby, J. T., Banihashemi, S., Grilli, S. T., Tajalli Bakhsh, T. and Shi, F., 2014, ``Tsunami inundation mapping on the upper East Coast of the U.S.", presented at Young Coastal Scientists and Engineers Conference  North America, Newark, July.
 Keshtpoor, M., Puleo, J. A., Shi, F., Ma, G., 2014,``Modeling of scour hole evolution inside the Indian River Inlet, DE, USA", presented at Young Coastal Scientists and Engineers Conference  North America, Newark, July.
 Wu, Guoxiang, Shi, F., and Kirby, J. T., 2014, "Modeling wave effects on storm surge and coastal inundation", presented at Young Coastal Scientists and Engineers Conference  North America, Newark, July.
 Shi, J., Shi, F., and Kirby, J. T., 2014, "Pressure Decimation and Interpolation method for modeling nonhydrostatic, baroclinic flows", presented at Young Coastal Scientists and Engineers Conference  North America, Newark, July.
 Jenkins, R. L. III, Kukulka, T., Kirby, J. T., Shi, F. and Scarborough, B. W., 2014, ``Physical factors controlling gravity wave evolution in the Delaware Bay and adjacent shelf", submitted for Mid Atlantic Bight Physical Oceanography Meeting, VIMS, Nov. 2014.
 Mieras, R., Kirby, J. T. and Shi, F., 2014, "The frictional nature of tidal propagation in channelized estuaries, with application to a tidal marsh in Delaware", presented at Young Coastal Scientists and Engineers Conference  North America, Newark, July.
 Tappin, D., Grilli, S., Harris, J., Geller, R. J., Masterlark, T., Kirby, J., Shi, F., Ma, G., Thingbaijam, K. K. S. and Mai, P. M., 2014, "The role of submarine landslides in the Great Eastern Japan tsunami of 2011", Geological Society of Japan
 Michael, H. A., Sawyer, A. H., Kroeger, K., Lazareva, O., Crespo, K., Russoniello, C., Shi, F., Kirby, J., Chan, C. S. and Stieglitz, T., 2014, "Geologic and hydrodynamic effects on shallow groundwatersurface water exchange and chemical fluxes to an estuary", submitted for 23d Salt Water Intrusion Meeting, Husum, June 1620.
 Mieras, R., Kirby, J. T. and Shi, F., 2014, "Modeling the response of a tidallydriven salt marsh with a complex channel network", Presented at 2014 Delaware Wetlands Conference, Dover, January 30.
13. Schnyder, J. S. D., Kirby, J. T., Shi, F., Tehranirad, B., Eberli, G. P., Mulder, T. and Ducassou, E., 2013, "Potential for tsunami generation along the western Great Bahama Bank by submarine slope failures", Abstract NH41A1689, AGU Fall Meeting, San Francisco, December.

Keshtpoor M., Puleo J.A., and Shi F., 2013, Numerical Simulation of Alongshore Variation of Sediment Transport Rate Downdrift of a Tidal Inlet, American Geophysical Union Fall Meeting, San Francisco, CA.
 Grilli, S., Harris, J. C., Kirby, J. T., Shi, F., Ma, G., Masterlark, T., Tappin, D. and Tajali Bakhsh, T. S., 2013, "On the dispersive modeling of the 2011 Tohoku tsunami generation by coseismic/SMF processes, and near and farfield impact", submitted for Workshop on water waves and floating bodies, April 710, Avignon.
 Tappin, D. R., Grilli, S. T., Harris, J. C., Masterlark, T., Kirby, J. T., Shi, F., and Ma, G., 2013, "Differentiating earthquake tsunamis from other sources; how do we tell the difference?", submitted for EGU General Assembly 2013, Vienna, Abstract EGU201310211.
 Grilli, S. T., Harris, J. C., Tappin, D. R., Masterlark, T., Kirby, J. T., Shi, F. and Ma, G., 2013, "Modeling of the Tohokuoki 2011 tsunami generation and coastal impact: a mixed coseismic and SMF source", 3d Nonlinear Wave Conference, Beijing, June 1215 (invited).
 Shi, F., Kirby, J. T., Ma, G., Holman, R. A. and Chickadel, C. C., 2012, "Field testing model predictions of foam coverage and bubble content in the surf zone'', Abstract OS21B1732, AGU Fall Meeting, San Francisco, Dec. 37.

Keshtpoor M., Puleo J.A., and Shi F., 2012, Sediment transport modeling within a tidal channel., Soil to Sea Geomorphology, University of Pennsylvania, Philadelphia, PA.

Keshtpoor M., Puleo J.A., and Shi F., 2012, Modeling turbulence near deep scour holes within a tidal inlet, American Geophysical Union, Ocean Sciences Meeting, Salt Lake City, UT.
 Ma, G., Kirby, J. T., Shi, F. and Grilli, S. T., 2012, "Tsunami wave generation by solid and deformable landslides", Abstract NH13A1579, AGU Fall Meeting, San Francisco, Dec. 37.
 Derakhti, M., Ma, G., Kirby, J. T. and Shi, F., 2012, "Numerical study of coherent structures and fluidbubble interactions under deepwater breaking waves", Abstract EP53G05, AGU Fall Meeting, San Francisco, Dec 37.
 Grilli, S. T., Harris, J. C., Tappin, D. R., Masterlark, T., Kirby, J. T., Shi, F. and Ma, G., 2012, "Did submarine mass failures significantly contribute to the extreme runup of the Tohokuoki 2011 tsunami in Sanriku?", Abstract NH43B1655,AGU Fall Meeting, San Francisco, Dec. 37."
 Grilli, S. T., Harris, J. C., Tajali Bakhsh, T. S., Tappin, D. R., Masterlark, T., Kirby, J. T., Shi, F. and Ma, G., 2012, "Modeling of the Tohokuoki 2011 tsunami coastal hazard: effects of a mixed coseismic and seabed failure source (invited)", Abstract NH42A06 AGU Fall Meeting, San Francisco, Dec 37.
 Kirby, J. T., Ma, G., Dong, Z., Hsu, T.J. and Shi, F., 2012, "Wavecurrent interaction in strongly sheared flows", Abstract OS11G08, AGU Fall Meeting, San Francisco, Dec 37.
 Sawyer, A. H., Shi, F., Kirby, J. T. and Michaels, H. A., 2012, ``Dynamic response of surface watergroundwater exchange to currents, tides and waves in a shallow estuary (invited)'', Abstract H13I02, AGU Fall Meeting, San Francisco, Dec. 37.
 Tehranirad, B., Kirby, J. T., Shi, F., Callahan, J. A., Harris, J. C., Grilli, S. T., Tajali Bakhsh, T. S. and Estibels, E., 2012, "Tsunami hazards on the US East Coast: Inundation mapping and tsunami processes over a wide shelf", Abstract NH33A1645, AGU Fall Meeting, San Francisco, Dec. 37.
 Tajalli Bakhsh, T. S., Grilli, S. T., Harris, J. C., Kirby, J. T., Shi, F. and Tehranirad, B., 2012, "Tsunami hazard assessment along the U. S. East Coast", Abstract NH31D08, AGU Fall Meeting, San Francisco, Dec. 37.
 Kirby, J. T., Ma, G., Derakhti, M. and Shi, F., 2012, "Turbulent coherent structures, mixing and bubble entrainment under surf zone breaking waves", Workshop on Environmental and Extreme Multiphase Flows, Gainesville, March 1416.
 Chen, J., Hsu, T.J., and Shi, F., 2012, "Numerical Modeling of hydrodynamics and sediment transport of New River Inlet (NC) using NearCoMTVD", Ocean Sciences Meeting , Salt Lake City, February
 Keshtpoor, M., Puleo, J. A., 2012, "Modeling tunbulence and sediment transport near deep scour holes within a tidal inlet", Ocean Sciences Meeting , Salt Lake City, February.
 Ma, G., Kirby, J. T. and Shi, F., 2012, "Numerical study of turbulent bubbly flow under surfzone breaking waves", Ocean Sciences Meeting , Salt Lake City, February.
 Shi, F., Kirby, J. T., Misra, S., Vittori, G. and Ramsey, J., 2012, "Process filtering and input filtering in modeling of sand pitinduced morphological evolution", Ocean Sciences Meeting , Salt Lake City, February.

Tehranirad, B., Kirby, J. T. and Shi, F., 2012, "Coastal plane estuaries as low pass filters for tsunami activity", Ocean Sciences Meeting , Salt Lake City, February.

Ma, G. Kirby, J. T. and Shi, F., 2011, "Numerical study of turbulent coherent structures and bubble entrainment under surzone breaking waves",
presented at APSDFD Meeting, Baltimore. {\em Bull. Am. Phys. Soc.}, {\bf 56}, 18, Abstract E3 6.
 Grilli, S., Harris, J., Tayalibaksh, T., Kirby, J., Shi, F., Masterlark, T. and Kyriakopoulos, C., 2011, "Numerical simulations of the 2011 Tohoku tsunami generation, propagation and coastal impact: comparison to field observations,
with sensitivity analysis to coseismic source parameters, model type and resolution", presented at 2011 Fall Meeting, AGU, San Francisco.

Shi, F., Kirby, J. T. and Tehranirad, B., 2010, "A highorder adaptive timestepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation", AGU Fall Meeting, San Francisco, December.

Ma, G., Kirby, J. T and Shi, F., 2010, "Numerical study of largescale turbulence and bubble entrainment under surfzone breaking waves", AGU Fall Meeting, San Francisco, December.

Kirby, J. T., Shi, F. and Holman, R. A., 2010, "Models and observations of foam coverage and bubble content in the surf zone", AGU Fall Meeting, San Francisco, December.

Kirby, J. T., Shi, F. and Ma, G., 2010, "A highorder adaptive time stepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation", Engineering Mechanics Conference, Los Angeles, August.

Shi, F., Kirby, J. T. and Hanes, D. M., 2010, "Is the erosional hotspot at Ocean Beach, San Francisco, caused by wave focussing?  From modeling point of view", Ocean Sciences Meeting, Portland, February.

Ma, G., Shi, F., and Kirby, J. T., 2010, ``A polydisperse twofluid model for surfzone bubble simulation", Ocean Sciences Meeting, Portland, February.

Shi, F., Zhu, S. and Kirby, J. T., 2008, ``A surfzone circulation model with influence of surfswash interaction'', AGU Fall Meeting, San Francisco, December 1519.

Ma, G., Shi, F. and Kirby, J. T., 2008, ``Twophase approach for simulating surfzone bubbles'', AGU Fall Meeting, San Francisco, December 1519.

Shi F., Hanes D. M. and Kirby J. T., 2007, "Modeling of an erosional hot spot at Ocean Beach, California", presented at ROMS Workshop, Los Angles, October.

Chen, Y., Shi, F. and Kirby, J. T., 2007, "Coupling of ROMS and SWAN for predicting waves and currents in Delaware Bay", poster presentation at Gordon Research Conference, New London, NH.

Shi, F., Johnson, N., and Kobayshi, N., 2008, ``2DH modeling of waves, currents and sediment transport at FRF during Hurricane Isabel", Ocean Sciences Meeting, AGU, Orlando, February.

Shi, F., Kirby, J. T., Haller, M. C. and Catalan, P., 2008, ``Numerical study on surfzone air bubbles using a multiphase VOF model'', Ocean Sciences Meeting, Orlando, February.

Shi F., Hanes, D., Eshleman J., Erikson L., Barnard P., and Kirby J. T., 2006, NearCoM modeling of
San Francisco Bight and its open coast, presented at the American Geophysical Union Fall Meeting, San Francisco, December 1115, 2006. (abstract published in EOS, Transaction AGU, 87 (52), 2006).

Shi, F., Kirby, J. T. and Haas, K., 2006, Investigation of consistency between two types of wave force formulation in modeling of rip currents, presented at Ocean Sciences Meeting, 2006.

Shi, F. and Kirby, J. T., 2004, Coupling SWAN, ROMS and NearCoM in a MCEL system, presented at Annual American Geophysical Union Meeting, San Francisco, December 1317, 2004.

Shi, F. and Kirby, J. T., 2004, An enhanced REF/DIF model for wave predictions in tidal inlets, presented at Ocean Sciences Meeting, Portland, January 2630, 2004.

Shi, F. and Kirby, J. T. ``An enhanced REF/DIF model for wave predictions
in tidal inlets", to be presented at Annual American Geophysical Union
meeting, Portland, January 2630, 2004.

Shi, F., Kirby, J. T., Dalrymple, R. A., and Svendsen, I. A., ``Curvilinear modeling of coastal waves and currents", presented at Coastal Engineering Today,
Gainesville, Oct. 810, 2003.

Shi, F., Kirby, J. T., Dalrymple, R. A. and Chen, Q., "On nonlinear properties of waves predicted by a Boussinesq model", presented at the American Geophysical Union Fall Meeting, San
Francisco, December 610, 2002. (abstract published in EOS, Transaction AGU, 82, F821, 2002)

Shi, F., Svendsen, I.A. and Kirby, J.T., 2000, A
curvilinear version of SHORECIRC, presented at American Geophysical
Union Fall Meeting, San Francisco, December 1318, 2000. (abstract published
in EOS, Transaction AGU, 81, F609, 2000.).

Shi, F., Kirby, J. T., Dalrymple, R. A.,
Chen, Q. and Zhen, F., 1999, Wave simulations in Ponce de Leon inlet using a
curvilinear Boussinesq model, presented at American Geophysical Union
Fall Meeting, San Francisco, December 1317, 1999. (abstract published in
EOS, Transactions AGU, 80, F497, 1999.)

Shi, F., 1999, Storm Surge Flood Modeling, invited talk at 1999 COAA
Annual Meeting, October 30, 1999, Maryland.
Additional Technical Reports
 Mieras, R., Kirby, J. T. and Shi, F., 2014, "A highresolution numerical model investigation into the response of a channelized salt marsh to a storm surge event", Research Report No. CACR1407, Center for Applied Coastal Research, Department of Civil and Environmental Engineering, University of Delaware.
 Tehranirad, B., Banihashemi, S., Kirby, J. T., Callahan, J. A. and Shi, F., 2014, "Tsunami inundation mapping for Ocean City, MD NGDC DEM", Research Report No. CACR1404, Center for Applied Coastal Research, Department of Civil and Environmental Engineering, University of Delaware.
 Ma, G., Kirby, J. T. and Shi, F., 2012, "Multiscale numerical study of turbulent flow and bubble entrainment in the surf zone", Research Report No. CACR1208, Center for Applied Coastal Research, Department of Civil and Environmental Engineering, Univ. of Delaware, Newark.
 Shi, F., Kirby, J. T., Ma, G., Tehranirad, B., 2012, "NonHydrostatic Wave Model NHWAVE  User's Guide for Modeling Submarine Landslide Tsunami", Research Report, CACR1204, University of Delaware, Newark, Delaware.
 Shi, F., Kirby, J. T., Tehranirad, B., 2012, "Tsunami Benchmark Results for Spherical Coordinate Version of FUNWAVETVD", Research Report, CACR1202, University of Delaware, Newark, Delaware.
 Shi, F., Kirby, J. T., Hsu, T.J., and Chen J.L., 2012, "NearCoMTVD, documentation and users' manual", Research Report, CACR (draft), University of Delaware, Newark, Delaware.

Shi, F., Kirby, J. T., Tehranirad, B. and Harris, J. C., 2011, ``FUNWAVETVD, documentation and users' manual'', Research Report, CACR1103, University of Delaware, Newark, Delaware.

Tehranirad, B., Shi, F., Kirby, J. T., Harris, J. C. and Grilli, S., 2011, "Tsunami benchmark results for fully nonlinear Boussinesq wave model FUNWAVETVD, Version 1.0", Research Report No. CACR1102, Center for Applied Coastal Research, Univ. of Delaware, Newark, Delaware

Chen, Y., Shi, F., and Kirby, J. T., 2010, Coupling of wave and circulation models for prediction storminduced waves, surges, and coastal inundation, Research Report 201006, Center for Appl. Coastal Res., Univ. of Del., Newark.

Shi, F., J. T. Kirby, P. A. Newberger, and K. Haas (2005), NearCoM master program, version 2005.4, User's manual and module integration, Research Report 200510, Center for Appl. Coastal Res., Univ. of Del., Newark.

Kirby, J. T., Dalrymple, R. A. and Shi, F., ``Combined Refraction/Diffraction Model REF/DIF 1, Version 2.6. Documentation and User's Manual'', Research Report No. CACR0202,
Center for Applied Coastal Research, Department of Civil Engineering, University of Delaware, Newark.

Hommel, D. L., Kirby, J. T. and Shi, F., ``Vortex formation resulting from solitary wave interaction with a breakwater'', Report CACR0103, Center for Applied Coastal Research,
Department of Civil and Environmental Engineering, University of Delaware, July 2001.

Shi, F., Dalrymple. R. A., Kirby, J. T., Chen, Q., and Kennedy, A. B., ``A Fully nonlinear Boussinesq Model
in generalized curvilinear coordinates", Center for Applied Coastal Research, Department of Civil Engineering, University of Delaware, Newark,1999